Module 1: Foundations of NGS Data, Quality Control, and Read Preprocessing
Module 2: High-Accuracy Read Alignment and Post-Alignment Processing
Module 3: Small Variant Calling Frameworks (SNVs and Indels)
Module 4: Somatic Variant Calling and Cancer Genomics
Module 5: Structural Variation (SV) Detection in Short-Read Data
Module 6: Long-Read Genomics for Structural Variant Discovery
Module 7: Copy Number Variation (CNV) Analysis and Detection
Module 8: Variant Annotation, Filtering, and Functional Effect Prediction
Module 9: Automated Workflow Management with Nextflow and Snakemake
Module 10: Containerization, HPC Deployment, and Pipeline Reproducibility
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